PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0058000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 279aa    MW: 30363.6 Da    PI: 5.1371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0058000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12113157554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + ErrRR+++ +++  Lr+llP++     +K +K++i+  A+ Y++s+
  Spipo2G0058000 113 HMISERRRREKMSKSYTDLRSLLPSP-----TKSNKISIVIAAISYLRSM 157
                     7899**********************.....9***************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-14106174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.018108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-12112162No hitNo description
PfamPF000101.4E-9113157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-10114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPGPSSLPW EEGEETVEPL FWSFGDELSS FSCGFTALVE LPPLPPSLLL PPPLPLPPPA  60
PETSFEGYQR EEREVPGYSG GCSMVQGTVE LPGKNDAGGD PAERGEGNRG IRHMISERRR  120
REKMSKSYTD LRSLLPSPTK SNKISIVIAA ISYLRSMRGQ LEALRRRNRV LSRRILGEAG  180
SGAVRLETIK LPIAAATASL ATNSLMEALR RLKAMGARPR SIRWSWTGEG LVAGADAKPT  240
KTAEETATVV ASILVQEEDE ELDDSLRLCE PIEGTWRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108120RGIRHMISERRRR
2116121ERRRRE
3117122RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450